BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007G01LP1|AL425745
(823 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1256 744 0.0
3x_Contig977 498 e-141
>3x_Contig1256
Length = 6519
Score = 744 bits (375), Expect = 0.0
Identities = 382/383 (99%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 442 atatacatactgtattatataatggtataaacaaaacgccgacaatcatattcttattga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6519 atatacatactgtattatataatggtataaacaaaacgccgacaatcatattcttattga 6460
Query: 502 ctacaaaattgtttcgtttcttccgctcctatgaccatactcatcattgcagaaaaatgt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6459 ctacaaaattgtttcgtttcttccgctcctatgaccatactcatcattgcagaaaaatgt 6400
Query: 562 taaaataaagggaaaccttgcactgtaagaaatagttgtgtaaaacatggaagaagagag 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6399 taaaataaagggaaaccttgcactgtaagaaatagttgtgtaaaacatggaagaagagag 6340
Query: 622 ggctttagaaagttc-cataaggatctggggctatacgactatcacactctaacggaatt 680
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6339 ggctttagaaagttctcataaggatctggggctatacgactatcacactctaacggaatt 6280
Query: 681 ccaaatgtcattcaaagttgttagttcaaaagtagctgcttccattgatcaagagttaat 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6279 ccaaatgtcattcaaagttgttagttcaaaagtagctgcttccattgatcaagagttaat 6220
Query: 741 gggccctgttgggttcactttacagcaattgatggagctcgcagggttatcggtagctga 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219 gggccctgttgggttcactttacagcaattgatggagctcgcagggttatcggtagctga 6160
Query: 801 agcagtgttacaacagtacccgg 823
|||||||||||||||||||||||
Sbjct: 6159 agcagtgttacaacagtacccgg 6137
>3x_Contig977
Length = 3887
Score = 498 bits (251), Expect = e-141
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 9 aggattactattctaacgtccaggcaaatgccaaccaaagtcccaatagccagtttgatt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aggattactattctaacgtccaggcaaatgccaaccaaagtcccaatagccagtttgatt 278
Query: 69 ggcccagagcaatgaccgagagtaccaatgggaaagctatggaacagatcaatgaggaag 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggcccagagcaatgaccgagagtaccaatgggaaagctatggaacagatcaatgaggaag 218
Query: 129 agcaacctgcgagaaagcgagtacggaaatatatcactagaaaagattccgacgtcgtgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agcaacctgcgagaaagcgagtacggaaatatatcactagaaaagattccgacgtcgtgg 158
Query: 189 gagatgtcttgcaactacaaaatacaccaccagtcagtgaccaagaaaagacatcatctc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gagatgtcttgcaactacaaaatacaccaccagtcagtgaccaagaaaagacatcatctc 98
Query: 249 taactgaggtt 259
|||||||||||
Sbjct: 97 taactgaggtt 87
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6181
Number of Sequences: 1807
Number of extensions: 6181
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 823
length of database: 10,358,551
effective HSP length: 16
effective length of query: 807
effective length of database: 10,329,639
effective search space: 8336018673
effective search space used: 8336018673
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)